PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG121100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 361aa    MW: 38706.6 Da    PI: 7.6263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG121100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10170212754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          e E++RR r+ +++  Lr l+P++     +K +Ka++   A+eYI++L
  Pavir.1KG121100.1.p 170 EKEKQRRLRLTEKYTALRLLIPNR-----TKDDKATVISDAIEYIQEL 212
                          67*********************9.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.1163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-8169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-8170212No hitNo description
SuperFamilySSF474593.14E-11170233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7170212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-9171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MYHPQCEHLM AHESRDLDAG QPHLTASAGV AAIPTELSFH LLHSLAAAAA VSTVMPQPTI  60
DYFFGAAADP HQPAVQYEPL PPTHQQHTMN MLRDYCNGVG HYAAAEPYLR GAGTGALVFS  120
ATNDESAAAY MPAGPFESSP PPRATGGRKR SRALMSGGGF HGGPANGGVE KEKQRRLRLT  180
EKYTALRLLI PNRTKDDKAT VISDAIEYIQ ELGRTVEELT LLVGKKRRRM ELQGDVVDVA  240
APVAGEAESS EGEVAPPPAA AAQQRQPIRS TYIQRRSKDT SVDVRIMEED VNIKLATKRR  300
RDGCLAAASR ALDDLRLDLV PSPAARSATA TSTCSTPRRP ALSSCPSADC RGDTETGHRQ  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152GRKRSRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967599.11e-156PREDICTED: transcription factor TIP2-like
SwissprotQ5JNS01e-119TIP2_ORYSJ; Transcription factor TIP2
TrEMBLK3XQC31e-156K3XQC3_SETIT; Uncharacterized protein
STRINGSi004106m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-18bHLH family protein